The organization of the Noored Kotkad is divided into regional subdivisions. The largest of these are the squads that overlap with the Estonian county borders and there are also 15 of them. The Noored Kotkad Squadron consists of squads and/or groups operating on the territory of one of the units of the Defence League.

Squadron is a subdivision of at least 90 members within a unit with a defined territory.

Group of Noored Kotkad is a subdivision of a squad or a squadron consisting of up to four teams. The group can have its own emblem and a scarf in its own colors.

Team is a subdivision of at least four young members. Team has a team chief elected at the general meeting of the group.