The organization of the Young Eagles is divided into regional subdivisions. The largest of these are the squads that overlap with the Estonian county borders and there are also 15 of them. The Young Eagles Squadron consists of squads and / or groups operating on the territory of one of the units of the Defence League.

Squadron is a subdivision of at least 90 members within a unit with a defined territory.

Group of Young Eagles is a subdivision of a squad or a squadron consisting of up to four teams. The group can have its own emblem and a scarf in its own colours.

Team is a subdivision of at least four young members. Team has a team chief elected at the general meeting of the group.